They do bother me.
My real name is one that is one that is impossible to intuit the spelling from the pronunciation or the pronunciation from the spelling for speakers of any language other than Vietnamese. But, if you are from one region of Vietnam you will pronounce it profoundly differently than if you are from the region where my mother was born. Of course I now live in an area of California where the large population of Vietnamese immigrants are from the other region so my name gets mispronounced by English and Vietnamese speakers pretty much anytime I leave the house.
To "simplify" things, my parents gave me an "American" first name when I was born figuring they would switch to that name once my father (an American soldier) got us over here. That one gets misspelled and mispronounced almost as frequently as my Vietnamese name even though it is not at all unusual. Its a common name similar to "Joanne". But this gets to me. No one ever looks at "Joanne" and says, "Joan". But and this gets to me, they do that to my name all of the time! Just ignore the "-ne" at the end completely.
So, I'm in favor of very, very clear names. Ann. No extraneous -e to throw people off.
If you need your kid to be different, I beg you, give them a funny haircut instead of a name with a quirky spelling.